# sequenced_cultures

genotype: L-LCS-:2-II-A8→3-I-A8
folder: Breseq/PE-2-WT-L-A8
ref: AM181176
parent: L-LCS-_2-II-A8
read_files:
5_S5_L001_R1_001, 5_S5_L001_R2_001, 5_S5_L002_R1_001, 5_S5_L002_R2_001, 5_S5_L003_R1_001, 5_S5_L003_R2_001, 5_S5_L004_R1_001, 5_S5_L004_R2_001


genotype: S-LCS+:5-II-d3→6-I-d3
folder: Breseq/PE-5-L17-s-d3
ref: AM181176
parent: S-LCS+_5-II-d3
read_files:
14_S14_L001_R1_001, 14_S14_L001_R2_001, 14_S14_L002_R1_001, 14_S14_L002_R2_001, 14_S14_L003_R1_001, 14_S14_L003_R2_001, 14_S14_L004_R1_001, 14_S14_L004_R2_001


genotype: L-LCS-:2-II-A7→3-I-A7
folder: Breseq/PE-2-WT-L-A7
ref: AM181176
parent: L-LCS-_2-II-A7
read_files:
4_S4_L001_R1_001, 4_S4_L001_R2_001, 4_S4_L002_R1_001, 4_S4_L002_R2_001, 4_S4_L003_R1_001, 4_S4_L003_R2_001, 4_S4_L004_R1_001, 4_S4_L004_R2_001


genotype: S-LCS-:7-II-f2→8-I-f2
folder: Breseq/PE-7-WT-f2
ref: AM181176
parent: S-LCS-_7-II-f2
read_files:
PE_7_WT_f2_S181_L002_R1_001, PE_7_WT_f2_S181_L002_R2_001, PE_7_WT_f2_S181_L003_R1_001, PE_7_WT_f2_S181_L003_R2_001, PE_7_WT_f2_S181_L004_R1_001


genotype: L-LCS-:3-II-E2→4-I-E2
folder: Breseq/PE-3-WT-L-E2
ref: AM181176
parent: L-LCS-_3-II-E2
read_files:
7_S7_L001_R1_001, 7_S7_L001_R2_001, 7_S7_L002_R1_001, 7_S7_L002_R2_001, 7_S7_L003_R1_001, 7_S7_L003_R2_001, 7_S7_L004_R1_001, 7_S7_L004_R2_001


genotype: S-LCS+:9-II-d3→10-I-d3
folder: Breseq/PE-9-L17-s-d3
ref: AM181176
parent: S-LCS+_9-II-d3
read_files:
21_S21_L001_R1_001, 21_S21_L001_R2_001, 21_S21_L002_R1_001, 21_S21_L002_R2_001, 21_S21_L003_R1_001, 21_S21_L003_R2_001, 21_S21_L004_R1_001, 21_S21_L004_R2_001


genotype: L-LCS-:1-II-A7→2-I-A7
folder: Breseq/PE-1-WT-L-A7
ref: AM181176
parent: L-LCS-_1-II-A7
read_files:
1_S1_L001_R1_001, 1_S1_L001_R2_001, 1_S1_L002_R1_001, 1_S1_L002_R2_001, 1_S1_L003_R1_001, 1_S1_L003_R2_001, 1_S1_L004_R1_001, 1_S1_L004_R2_001


genotype: L-LCS-: 10-II-A3→
folder: Breseq/WT_L/WT_A3
ref: AM181176
parent: L-LCS-_10-II-A3
read_files:
WT_A3_S40_L001_R2_001, WT_A3_S40_L002_R1_001, WT_A3_S40_L002_R2_001, WT_A3_S40_L003_R1_001, WT_A3_S40_L003_R2_001


genotype: L-LCS-: 10-II-A4→
folder: Breseq/WT_L/WT_A4
ref: AM181176
parent: L-LCS-_10-II-A4
read_files:
WT_A4_S41_L002_R1_001, WT_A4_S41_L002_R2_001, WT_A4_S41_L003_R1_001, WT_A4_S41_L004_R1_001, WT_A4_S41_L004_R2_001


genotype: L-LCS-: 10-II-C6→
folder: Breseq/WT_L/WT_C6
ref: AM181176
parent: L-LCS-_10-II-C6
read_files:
WT_C6_S57_L001_R1_001, WT_C6_S57_L002_R1_001, WT_C6_S57_L002_R2_001, WT_C6_S57_L003_R1_001, WT_C6_S57_L003_R2_001, WT_C6_S57_L004_R1_001, WT_C6_S57_L004_R2_001


genotype: L-LCS-: 10-II-C5→
folder: Breseq/WT_L/WT_C5
ref: AM181176
parent: L-LCS-_10-II-C5
read_files:
WT_C5_S56_L001_R2_001, WT_C5_S56_L002_R1_001, WT_C5_S56_L002_R2_001, WT_C5_S56_L003_R2_001, WT_C5_S56_L004_R1_001, WT_C5_S56_L004_R2_001


genotype: L-LCS-: 10-II-F8→
folder: Breseq/WT_L/WT_F8
ref: AM181176
parent: L-LCS-_10-II-F8
read_files:
WT_F8_S80_L001_R1_001, WT_F8_S80_L001_R2_001, WT_F8_S80_L003_R1_001, WT_F8_S80_L003_R2_001, WT_F8_S80_L004_R2_001


genotype: L-LCS-: 10-II-D7→
folder: Breseq/WT_L/WT_D7
ref: AM181176
parent: L-LCS-_10-II-D7
read_files:
WT_D7_S65_L001_R1_001, WT_D7_S65_L001_R2_001, WT_D7_S65_L003_R1_001, WT_D7_S65_L003_R2_001, WT_D7_S65_L004_R1_001, WT_D7_S65_L004_R2_001


genotype: L-LCS-: 10-II-F1→
folder: Breseq/WT_L/WT_F1
ref: AM181176
parent: L-LCS-_10-II-F1
read_files:
WT_F1_S74_L001_R1_001, WT_F1_S74_L001_R2_001, WT_F1_S74_L002_R1_001, WT_F1_S74_L002_R2_001, WT_F1_S74_L003_R1_001, WT_F1_S74_L003_R2_001, WT_F1_S74_L004_R1_001, WT_F1_S74_L004_R2_001


genotype: L-LCS-: 10-II-B6→
folder: Breseq/WT_L/WT_B6
ref: AM181176
parent: L-LCS-_10-II-B6
read_files:
WT_B6_S50_L001_R1_001, WT_B6_S50_L001_R2_001, WT_B6_S50_L002_R2_001, WT_B6_S50_L003_R1_001, WT_B6_S50_L003_R2_001, WT_B6_S50_L004_R1_001, WT_B6_S50_L004_R2_001


genotype: L-LCS-: 10-II-A1→
folder: Breseq/WT_L/WT_A1
ref: AM181176
parent: L-LCS-_10-II-A1
read_files:
WT_A1_S38_L001_R2_001, WT_A1_S38_L002_R1_001, WT_A1_S38_L003_R2_001, WT_A1_S38_L004_R1_001, WT_A1_S38_L004_R2_001


genotype: L-LCS-: 10-II-E3→
folder: Breseq/WT_L/WT_E3
ref: AM181176
parent: L-LCS-_10-II-E3
read_files:
WT_E3_S69_L001_R2_001, WT_E3_S69_L002_R1_001, WT_E3_S69_L002_R2_001, WT_E3_S69_L003_R2_001, WT_E3_S69_L004_R1_001


genotype: L-LCS-: 10-II-A6→
folder: Breseq/WT_L/WT_A6
ref: AM181176
parent: L-LCS-_10-II-A6
read_files:
WT_A6_S43_L001_R1_001, WT_A6_S43_L001_R2_001, WT_A6_S43_L002_R2_001, WT_A6_S43_L003_R1_001, WT_A6_S43_L003_R2_001, WT_A6_S43_L004_R1_001


genotype: L-LCS-: 10-II-E7→
folder: Breseq/WT_L/WT_E7
ref: AM181176
parent: L-LCS-_10-II-E7
read_files:
WT_E7_S72_L001_R1_001, WT_E7_S72_L001_R2_001, WT_E7_S72_L002_R1_001, WT_E7_S72_L003_R2_001, WT_E7_S72_L004_R1_001


genotype: L-LCS-: 10-II-F2→
folder: Breseq/WT_L/WT_F2
ref: AM181176
parent: L-LCS-_10-II-F2
read_files:
WT_F2_S75_L001_R2_001, WT_F2_S75_L003_R1_001, WT_F2_S75_L003_R2_001, WT_F2_S75_L004_R1_001, WT_F2_S75_L004_R2_001


genotype: L-LCS-: 10-II-F6→
folder: Breseq/WT_L/WT_F6
ref: AM181176
parent: L-LCS-_10-II-F6
read_files:
WT_F6_S78_L001_R1_001, WT_F6_S78_L002_R1_001, WT_F6_S78_L002_R2_001, WT_F6_S78_L003_R1_001, WT_F6_S78_L003_R2_001, WT_F6_S78_L004_R2_001


genotype: L-LCS-: 10-II-E1→
folder: Breseq/WT_L/WT_E1
ref: AM181176
parent: L-LCS-_10-II-E1
read_files:
WT_E1_S67_L001_R1_001, WT_E1_S67_L002_R1_001, WT_E1_S67_L002_R2_001, WT_E1_S67_L003_R1_001, WT_E1_S67_L003_R2_001, WT_E1_S67_L004_R1_001, WT_E1_S67_L004_R2_001


genotype: L-LCS-: 10-II-B5→
folder: Breseq/WT_L/WT_B5
ref: AM181176
parent: L-LCS-_10-II-B5
read_files:
WT_B5_S49_L001_R1_001, WT_B5_S49_L002_R1_001, WT_B5_S49_L002_R2_001, WT_B5_S49_L003_R1_001, WT_B5_S49_L003_R2_001, WT_B5_S49_L004_R2_001


genotype: L-LCS-: 10-II-D1→
folder: Breseq/WT_L/WT_D1
ref: AM181176
parent: L-LCS-_10-II-D1
read_files:
WT_D1_S60_L001_R1_001, WT_D1_S60_L001_R2_001, WT_D1_S60_L002_R1_001, WT_D1_S60_L003_R1_001, WT_D1_S60_L004_R2_001


genotype: L-LCS-: 10-II-C7→
folder: Breseq/WT_L/WT_C7
ref: AM181176
parent: L-LCS-_10-II-C7
read_files:
WT_C7_S58_L001_R2_001, WT_C7_S58_L002_R1_001, WT_C7_S58_L003_R1_001, WT_C7_S58_L003_R2_001, WT_C7_S58_L004_R1_001, WT_C7_S58_L004_R2_001


genotype: L-LCS-: 10-II-D6→
folder: Breseq/WT_L/WT_D6
ref: AM181176
parent: L-LCS-_10-II-D6
read_files:
WT_D6_S64_L001_R1_001, WT_D6_S64_L001_R2_001, WT_D6_S64_L002_R1_001, WT_D6_S64_L002_R2_001, WT_D6_S64_L003_R1_001, WT_D6_S64_L003_R2_001, WT_D6_S64_L004_R2_001


genotype: L-LCS-: 10-II-E2→
folder: Breseq/WT_L/WT_E2
ref: AM181176
parent: L-LCS-_10-II-E2
read_files:
WT_E2_S68_L001_R1_001, WT_E2_S68_L001_R2_001, WT_E2_S68_L002_R1_001, WT_E2_S68_L002_R2_001, WT_E2_S68_L003_R1_001


genotype: L-LCS-: 10-II-C2→
folder: Breseq/WT_L/WT_C2
ref: AM181176
parent: L-LCS-_10-II-C2
read_files:
WT_C2_S53_L001_R1_001, WT_C2_S53_L001_R2_001, WT_C2_S53_L003_R1_001, WT_C2_S53_L003_R2_001, WT_C2_S53_L004_R1_001, WT_C2_S53_L004_R2_001


genotype: L-LCS-: 10-II-B7→
folder: Breseq/WT_L/WT_B7
ref: AM181176
parent: L-LCS-_10-II-B7
read_files:
WT_B7_S51_L001_R1_001, WT_B7_S51_L001_R2_001, WT_B7_S51_L002_R1_001, WT_B7_S51_L002_R2_001, WT_B7_S51_L003_R1_001, WT_B7_S51_L003_R2_001, WT_B7_S51_L004_R1_001, WT_B7_S51_L004_R2_001


genotype: L-LCS-: 10-II-D5→
folder: Breseq/WT_L/WT_D5
ref: AM181176
parent: L-LCS-_10-II-D5
read_files:
WT_D5_S63_L001_R2_001, WT_D5_S63_L002_R1_001, WT_D5_S63_L002_R2_001, WT_D5_S63_L003_R2_001, WT_D5_S63_L004_R2_001


genotype: L-LCS-: 10-II-A2→
folder: Breseq/WT_L/WT_A2
ref: AM181176
parent: L-LCS-_10-II-A2
read_files:
WT_A2_S39_L001_R2_001, WT_A2_S39_L002_R1_001, WT_A2_S39_L002_R2_001, WT_A2_S39_L004_R1_001, WT_A2_S39_L004_R2_001


genotype: L-LCS-: 10-II-A5→
folder: Breseq/WT_L/WT_A5
ref: AM181176
parent: L-LCS-_10-II-A5
read_files:
WT_A5_S42_L001_R1_001, WT_A5_S42_L002_R1_001, WT_A5_S42_L002_R2_001, WT_A5_S42_L003_R2_001, WT_A5_S42_L004_R1_001, WT_A5_S42_L004_R2_001


genotype: L-LCS-: 10-II-E4→
folder: Breseq/WT_L/WT_E4
ref: AM181176
parent: L-LCS-_10-II-E4
read_files:
WT_E4_S70_L001_R1_001, WT_E4_S70_L001_R2_001, WT_E4_S70_L002_R1_001, WT_E4_S70_L002_R2_001, WT_E4_S70_L003_R1_001, WT_E4_S70_L003_R2_001


genotype: L-LCS-: 10-II-A7→
folder: Breseq/WT_L/WT_A7
ref: AM181176
parent: L-LCS-_10-II-A7
read_files:
WT_A7_S44_L001_R2_001, WT_A7_S44_L002_R1_001, WT_A7_S44_L002_R2_001, WT_A7_S44_L003_R1_001, WT_A7_S44_L003_R2_001, WT_A7_S44_L004_R1_001, WT_A7_S44_L004_R2_001


genotype: L-LCS-: 10-II-C3→
folder: Breseq/WT_L/WT_C3
ref: AM181176
parent: L-LCS-_10-II-C3
read_files:
WT_C3_S54_L001_R2_001, WT_C3_S54_L002_R1_001, WT_C3_S54_L002_R2_001, WT_C3_S54_L003_R1_001, WT_C3_S54_L004_R1_001, WT_C3_S54_L004_R2_001


genotype: L-LCS-: 10-II-B1→
folder: Breseq/WT_L/WT_B1
ref: AM181176
parent: L-LCS-_10-II-B1
read_files:
WT_B1_S45_L001_R1_001, WT_B1_S45_L001_R2_001, WT_B1_S45_L002_R1_001, WT_B1_S45_L003_R2_001, WT_B1_S45_L004_R1_001, WT_B1_S45_L004_R2_001


genotype: L-LCS-: 10-II-B8→
folder: Breseq/WT_L/WT_B8
ref: AM181176
parent: L-LCS-_10-II-B8
read_files:
WT_B8_S52_L001_R1_001, WT_B8_S52_L001_R2_001, WT_B8_S52_L002_R2_001, WT_B8_S52_L003_R1_001, WT_B8_S52_L003_R2_001, WT_B8_S52_L004_R2_001


genotype: L-LCS-:2-II-A6→3-I-A6
folder: Breseq/PE-2-WT-L-A6
ref: AM181176
parent: L-LCS-_2-II-A6
read_files:
3_S3_L001_R1_001, 3_S3_L001_R2_001, 3_S3_L002_R1_001, 3_S3_L002_R2_001, 3_S3_L003_R1_001, 3_S3_L003_R2_001, 3_S3_L004_R1_001, 3_S3_L004_R2_001


genotype: S-LCS+:6-II-d6→7-I-d6
folder: Breseq/PE-6-L17-s-d6
ref: AM181176
parent: S-LCS+_6-II-d6
read_files:
16_S16_L001_R1_001, 16_S16_L001_R2_001, 16_S16_L002_R1_001, 16_S16_L002_R2_001, 16_S16_L003_R1_001, 16_S16_L003_R2_001, 16_S16_L004_R1_001, 16_S16_L004_R2_001


genotype: S-LCS+:4-II-d2→5-I-d2
folder: Breseq/PE-4-L17-s-d2
ref: AM181176
parent: S-LCS+_4-II-d2
read_files:
13_S13_L001_R1_001, 13_S13_L001_R2_001, 13_S13_L002_R1_001, 13_S13_L002_R2_001, 13_S13_L003_R1_001, 13_S13_L003_R2_001, 13_S13_L004_R1_001, 13_S13_L004_R2_001


genotype: S-LCS+: 10-II-d4→
folder: Breseq/17_s/17_d4
ref: AM181176
parent: S-LCS+_10-II-d4
read_files:
108_S12_L001_R1_001, 108_S12_L001_R2_001, 108_S12_L002_R1_001, 108_S12_L002_R2_001, 108_S12_L003_R1_001, 108_S12_L003_R2_001, 108_S12_L004_R1_001, 108_S12_L004_R2_001


genotype: S-LCS+: 10-II-f2→
folder: Breseq/17_s/17_f2
ref: AM181176
parent: S-LCS+_10-II-f2
read_files:
17_f2_S122_L001_R1_001, 17_f2_S122_L001_R2_001, 17_f2_S122_L002_R1_001, 17_f2_S122_L002_R2_001, 17_f2_S122_L003_R1_001, 17_f2_S122_L004_R1_001


genotype: S-LCS+: 10-II-e1→
folder: Breseq/17_s/17_e1
ref: AM181176
parent: S-LCS+_10-II-e1
read_files:
113_S17_L001_R1_001, 113_S17_L001_R2_001, 113_S17_L002_R1_001, 113_S17_L002_R2_001, 113_S17_L003_R1_001, 113_S17_L003_R2_001, 113_S17_L004_R1_001, 113_S17_L004_R2_001


genotype: S-LCS+: 10-II-c3→
folder: Breseq/17_s/17_c3
ref: AM181176
parent: S-LCS+_10-II-c3
read_files:
99_S3_L001_R1_001, 99_S3_L001_R2_001, 99_S3_L002_R1_001, 99_S3_L002_R2_001, 99_S3_L003_R1_001, 99_S3_L003_R2_001, 99_S3_L004_R1_001, 99_S3_L004_R2_001


genotype: S-LCS+: 10-II-a4→
folder: Breseq/17_s/17_a4
ref: AM181176
parent: S-LCS+_10-II-a4
read_files:
17_a4_S83_L001_R2_001, 17_a4_S83_L002_R1_001, 17_a4_S83_L002_R2_001, 17_a4_S83_L003_R2_001, 17_a4_S83_L004_R1_001, 17_a4_S83_L004_R2_001


genotype: S-LCS+: 10-II-d8→
folder: Breseq/17_s/17_d8
ref: AM181176
parent: S-LCS+_10-II-d8
read_files:
112_S16_L001_R1_001, 112_S16_L001_R2_001, 112_S16_L002_R1_001, 112_S16_L002_R2_001, 112_S16_L003_R1_001, 112_S16_L003_R2_001, 112_S16_L004_R1_001, 112_S16_L004_R2_001


genotype: S-LCS+: 10-II-e5→
folder: Breseq/17_s/17_e5
ref: AM181176
parent: S-LCS+_10-II-e5
read_files:
117_S21_L001_R1_001, 117_S21_L001_R2_001, 117_S21_L002_R1_001, 117_S21_L002_R2_001, 117_S21_L003_R1_001, 117_S21_L003_R2_001, 117_S21_L004_R1_001, 117_S21_L004_R2_001


genotype: S-LCS+: 10-II-a2→
folder: Breseq/17_s/17_a2
ref: AM181176
parent: S-LCS+_10-II-a2
read_files:
17_a2_S91_L001_R1_001, 17_a2_S91_L002_R1_001, 17_a2_S91_L002_R2_001, 17_a2_S91_L003_R1_001, 17_a2_S91_L004_R1_001, 17_a2_S91_L004_R2_001


genotype: S-LCS+: 10-II-e7→
folder: Breseq/17_s/17_e7
ref: AM181176
parent: S-LCS+_10-II-e7
read_files:
119_S23_L001_R1_001, 119_S23_L001_R2_001, 119_S23_L002_R1_001, 119_S23_L002_R2_001, 119_S23_L003_R1_001, 119_S23_L003_R2_001, 119_S23_L004_R1_001, 119_S23_L004_R2_001


genotype: S-LCS+: 10-II-f8→
folder: Breseq/17_s/17_f8
ref: AM181176
parent: S-LCS+_10-II-f8
read_files:
17_f8_S128_L001_R1_001, 17_f8_S128_L001_R2_001, 17_f8_S128_L002_R1_001, 17_f8_S128_L002_R2_001, 17_f8_S128_L003_R1_001, 17_f8_S128_L003_R2_001, 17_f8_S128_L004_R2_001


genotype: S-LCS+: 10-II-d7→
folder: Breseq/17_s/17_d7
ref: AM181176
parent: S-LCS+_10-II-d7
read_files:
111_S15_L001_R1_001, 111_S15_L001_R2_001, 111_S15_L002_R1_001, 111_S15_L002_R2_001, 111_S15_L003_R1_001, 111_S15_L003_R2_001, 111_S15_L004_R1_001, 111_S15_L004_R2_001


genotype: S-LCS+: 10-II-a7→
folder: Breseq/17_s/17_a7
ref: AM181176
parent: S-LCS+_10-II-a7
read_files:
17_a7_S86_L001_R1_001, 17_a7_S86_L001_R2_001, 17_a7_S86_L002_R1_001, 17_a7_S86_L003_R1_001, 17_a7_S86_L003_R2_001, 17_a7_S86_L004_R1_001, 17_a7_S86_L004_R2_001


genotype: S-LCS+: 10-II-c5→
folder: Breseq/17_s/17_c5
ref: AM181176
parent: S-LCS+_10-II-c5
read_files:
101_S5_L001_R1_001, 101_S5_L001_R2_001, 101_S5_L002_R1_001, 101_S5_L002_R2_001, 101_S5_L003_R1_001, 101_S5_L003_R2_001, 101_S5_L004_R1_001, 101_S5_L004_R2_001


genotype: S-LCS+: 10-II-b2→
folder: Breseq/17_s/17_b2
ref: AM181176
parent: S-LCS+_10-II-b2
read_files:
17_b2_S89_L001_R1_001, 17_b2_S89_L002_R1_001, 17_b2_S89_L003_R1_001, 17_b2_S89_L003_R2_001, 17_b2_S89_L004_R1_001


genotype: S-LCS+: 10-II-c4→
folder: Breseq/17_s/17_c4
ref: AM181176
parent: S-LCS+_10-II-c4
read_files:
100_S4_L001_R1_001, 100_S4_L001_R2_001, 100_S4_L002_R1_001, 100_S4_L002_R2_001, 100_S4_L003_R1_001, 100_S4_L003_R2_001, 100_S4_L004_R1_001, 100_S4_L004_R2_001


genotype: S-LCS+: 10-II-f1→
folder: Breseq/17_s/17_f1
ref: AM181176
parent: S-LCS+_10-II-f1
read_files:
17_f1_S121_L001_R1_001, 17_f1_S121_L001_R2_001, 17_f1_S121_L002_R1_001, 17_f1_S121_L003_R1_001, 17_f1_S121_L003_R2_001, 17_f1_S121_L004_R1_001, 17_f1_S121_L004_R2_001


genotype: S-LCS+: 10-II-c7→
folder: Breseq/17_s/17_c7
ref: AM181176
parent: S-LCS+_10-II-c7
read_files:
103_S7_L001_R1_001, 103_S7_L001_R2_001, 103_S7_L002_R1_001, 103_S7_L002_R2_001, 103_S7_L003_R1_001, 103_S7_L003_R2_001, 103_S7_L004_R1_001, 103_S7_L004_R2_001


genotype: S-LCS+: 10-II-a5→
folder: Breseq/17_s/17_a5
ref: AM181176
parent: S-LCS+_10-II-a5
read_files:
17_a5_S84_L001_R1_001, 17_a5_S84_L001_R2_001, 17_a5_S84_L002_R2_001, 17_a5_S84_L003_R2_001, 17_a5_S84_L004_R1_001


genotype: S-LCS+: 10-II-b6→
folder: Breseq/17_s/17_b6
ref: AM181176
parent: S-LCS+_10-II-b6
read_files:
17_b6_S94_L001_R1_001, 17_b6_S94_L002_R1_001, 17_b6_S94_L003_R1_001, 17_b6_S94_L003_R2_001, 17_b6_S94_L004_R1_001, 17_b6_S94_L004_R2_001


genotype: S-LCS+: 10-II-c6→
folder: Breseq/17_s/17_c6
ref: AM181176
parent: S-LCS+_10-II-c6
read_files:
102_S6_L001_R1_001, 102_S6_L001_R2_001, 102_S6_L002_R1_001, 102_S6_L002_R2_001, 102_S6_L003_R1_001, 102_S6_L003_R2_001, 102_S6_L004_R1_001, 102_S6_L004_R2_001


genotype: S-LCS+: 10-II-b5→
folder: Breseq/17_s/17_b5
ref: AM181176
parent: S-LCS+_10-II-b5
read_files:
17_b5_S93_L001_R2_001, 17_b5_S93_L002_R1_001, 17_b5_S93_L002_R2_001, 17_b5_S93_L003_R1_001, 17_b5_S93_L004_R1_001, 17_b5_S93_L004_R2_001


genotype: S-LCS+: 10-II-d6→
folder: Breseq/17_s/17_d6
ref: AM181176
parent: S-LCS+_10-II-d6
read_files:
110_S14_L001_R1_001, 110_S14_L001_R2_001, 110_S14_L002_R1_001, 110_S14_L002_R2_001, 110_S14_L003_R1_001, 110_S14_L003_R2_001, 110_S14_L004_R1_001, 110_S14_L004_R2_001


genotype: S-LCS+: 10-II-e8→
folder: Breseq/17_s/17_e8
ref: AM181176
parent: S-LCS+_10-II-e8
read_files:
120_S24_L001_R1_001, 120_S24_L001_R2_001, 120_S24_L002_R1_001, 120_S24_L002_R2_001, 120_S24_L003_R1_001, 120_S24_L003_R2_001, 120_S24_L004_R1_001, 120_S24_L004_R2_001


genotype: S-LCS+: 10-II-e3→
folder: Breseq/17_s/17_e3
ref: AM181176
parent: S-LCS+_10-II-e3
read_files:
115_S19_L001_R1_001, 115_S19_L001_R2_001, 115_S19_L002_R1_001, 115_S19_L002_R2_001, 115_S19_L003_R1_001, 115_S19_L003_R2_001, 115_S19_L004_R1_001, 115_S19_L004_R2_001


genotype: S-LCS+: 10-II-c8→
folder: Breseq/17_s/17_c8
ref: AM181176
parent: S-LCS+_10-II-c8
read_files:
104_S8_L001_R1_001, 104_S8_L001_R2_001, 104_S8_L002_R1_001, 104_S8_L002_R2_001, 104_S8_L003_R1_001, 104_S8_L003_R2_001, 104_S8_L004_R1_001, 104_S8_L004_R2_001


genotype: S-LCS+: 10-II-e4→
folder: Breseq/17_s/17_e4
ref: AM181176
parent: S-LCS+_10-II-e4
read_files:
116_S20_L001_R1_001, 116_S20_L001_R2_001, 116_S20_L002_R1_001, 116_S20_L002_R2_001, 116_S20_L003_R1_001, 116_S20_L003_R2_001, 116_S20_L004_R1_001, 116_S20_L004_R2_001


genotype: S-LCS+: 10-II-d1→
folder: Breseq/17_s/17_d1
ref: AM181176
parent: S-LCS+_10-II-d1
read_files:
105_S9_L001_R1_001, 105_S9_L001_R2_001, 105_S9_L002_R1_001, 105_S9_L002_R2_001, 105_S9_L003_R1_001, 105_S9_L003_R2_001, 105_S9_L004_R1_001, 105_S9_L004_R2_001


genotype: S-LCS+: 10-II-b7→
folder: Breseq/17_s/17_b7
ref: AM181176
parent: S-LCS+_10-II-b7
read_files:
17_b7_S95_L001_R1_001, 17_b7_S95_L001_R2_001, 17_b7_S95_L002_R2_001, 17_b7_S95_L003_R2_001, 17_b7_S95_L004_R2_001


genotype: S-LCS+: 10-II-d5→
folder: Breseq/17_s/17_d5
ref: AM181176
parent: S-LCS+_10-II-d5
read_files:
109_S13_L001_R1_001, 109_S13_L001_R2_001, 109_S13_L002_R1_001, 109_S13_L002_R2_001, 109_S13_L003_R1_001, 109_S13_L003_R2_001, 109_S13_L004_R1_001, 109_S13_L004_R2_001


genotype: S-LCS+: 10-II-c1→
folder: Breseq/17_s/17_c1
ref: AM181176
parent: S-LCS+_10-II-c1
read_files:
97_S1_L001_R1_001, 97_S1_L001_R2_001, 97_S1_L002_R1_001, 97_S1_L002_R2_001, 97_S1_L003_R1_001, 97_S1_L003_R2_001, 97_S1_L004_R1_001, 97_S1_L004_R2_001


genotype: S-LCS+: 10-II-b8→
folder: Breseq/17_s/17_b8
ref: AM181176
parent: S-LCS+_10-II-b8
read_files:
17_b8_S96_L001_R1_001, 17_b8_S96_L001_R2_001, 17_b8_S96_L002_R1_001, 17_b8_S96_L002_R2_001, 17_b8_S96_L003_R1_001, 17_b8_S96_L003_R2_001, 17_b8_S96_L004_R1_001, 17_b8_S96_L004_R2_001


genotype: S-LCS+: 10-II-e6→
folder: Breseq/17_s/17_e6
ref: AM181176
parent: S-LCS+_10-II-e6
read_files:
118_S22_L001_R1_001, 118_S22_L001_R2_001, 118_S22_L002_R1_001, 118_S22_L002_R2_001, 118_S22_L003_R1_001, 118_S22_L003_R2_001, 118_S22_L004_R1_001, 118_S22_L004_R2_001


genotype: S-LCS+: 10-II-d2→
folder: Breseq/17_s/17_d2
ref: AM181176
parent: S-LCS+_10-II-d2
read_files:
106_S10_L001_R1_001, 106_S10_L001_R2_001, 106_S10_L002_R1_001, 106_S10_L002_R2_001, 106_S10_L003_R1_001, 106_S10_L003_R2_001, 106_S10_L004_R1_001, 106_S10_L004_R2_001


genotype: S-LCS+: 10-II-d3→
folder: Breseq/17_s/17_d3
ref: AM181176
parent: S-LCS+_10-II-d3
read_files:
107_S11_L001_R1_001, 107_S11_L001_R2_001, 107_S11_L002_R1_001, 107_S11_L002_R2_001, 107_S11_L003_R1_001, 107_S11_L003_R2_001, 107_S11_L004_R1_001, 107_S11_L004_R2_001


genotype: S-LCS+: 10-II-a1→
folder: Breseq/17_s/17_a1
ref: AM181176
parent: S-LCS+_10-II-a1
read_files:
17_a1_S81_L001_R1_001, 17_a1_S81_L001_R2_001, 17_a1_S81_L002_R1_001, 17_a1_S81_L003_R2_001, 17_a1_S81_L004_R2_001


genotype: S-LCS+: 10-II-c2→
folder: Breseq/17_s/17_c2
ref: AM181176
parent: S-LCS+_10-II-c2
read_files:
98_S2_L001_R1_001, 98_S2_L001_R2_001, 98_S2_L002_R1_001, 98_S2_L002_R2_001, 98_S2_L003_R1_001, 98_S2_L003_R2_001, 98_S2_L004_R1_001, 98_S2_L004_R2_001


genotype: S-LCS+: 10-II-b1→
folder: Breseq/17_s/17_b1
ref: AM181176
parent: S-LCS+_10-II-b1
read_files:
17_b1_S88_L001_R2_001, 17_b1_S88_L002_R1_001, 17_b1_S88_L003_R1_001, 17_b1_S88_L003_R2_001, 17_b1_S88_L004_R2_001


genotype: S-LCS+: 10-II-b4→
folder: Breseq/17_s/17_b4
ref: AM181176
parent: S-LCS+_10-II-b4
read_files:
17_b4_S92_L001_R1_001, 17_b4_S92_L001_R2_001, 17_b4_S92_L002_R2_001, 17_b4_S92_L003_R1_001, 17_b4_S92_L004_R1_001


genotype: S-LCS+: 10-II-f6→
folder: Breseq/17_s/17_f6
ref: AM181176
parent: S-LCS+_10-II-f6
read_files:
17_f6_S126_L001_R2_001, 17_f6_S126_L002_R1_001, 17_f6_S126_L002_R2_001, 17_f6_S126_L004_R1_001, 17_f6_S126_L004_R2_001


genotype: S-LCS+: 10-II-a3→
folder: Breseq/17_s/17_a3
ref: AM181176
parent: S-LCS+_10-II-a3
read_files:
17_a3_S82_L001_R1_001, 17_a3_S82_L002_R1_001, 17_a3_S82_L002_R2_001, 17_a3_S82_L003_R1_001, 17_a3_S82_L004_R1_001, 17_a3_S82_L004_R2_001


genotype: S-LCS+: 10-II-a6→
folder: Breseq/17_s/17_a6
ref: AM181176
parent: S-LCS+_10-II-a6
read_files:
17_a6_S85_L001_R1_001, 17_a6_S85_L001_R2_001, 17_a6_S85_L002_R1_001, 17_a6_S85_L003_R1_001, 17_a6_S85_L003_R2_001, 17_a6_S85_L004_R2_001


genotype: S-LCS+: 10-II-e2→
folder: Breseq/17_s/17_e2
ref: AM181176
parent: S-LCS+_10-II-e2
read_files:
114_S18_L001_R1_001, 114_S18_L001_R2_001, 114_S18_L002_R1_001, 114_S18_L002_R2_001, 114_S18_L003_R1_001, 114_S18_L003_R2_001, 114_S18_L004_R1_001, 114_S18_L004_R2_001


genotype: S-LCS+:7-II-d3→8-I-d3
folder: Breseq/PE-7-L17-s-d3
ref: AM181176
parent: S-LCS+_7-II-d3
read_files:
17_S17_L001_R1_001, 17_S17_L001_R2_001, 17_S17_L002_R1_001, 17_S17_L002_R2_001, 17_S17_L003_R1_001, 17_S17_L003_R2_001, 17_S17_L004_R1_001, 17_S17_L004_R2_001


genotype: S-LCS+:8-II-d8→9-I-d8
folder: Breseq/PE-8-L17-s-d8
ref: AM181176
parent: S-LCS+_8-II-d8
read_files:
20_S20_L001_R1_001, 20_S20_L001_R2_001, 20_S20_L002_R1_001, 20_S20_L002_R2_001, 20_S20_L003_R1_001, 20_S20_L003_R2_001, 20_S20_L004_R1_001, 20_S20_L004_R2_001


genotype: S-LCS+:3-II-d2→4-I-d2
folder: Breseq/PE-3-L17-s-d2
ref: AM181176
parent: S-LCS+_3-II-d2
read_files:
12_S12_L001_R1_001, 12_S12_L001_R2_001, 12_S12_L002_R1_001, 12_S12_L002_R2_001, 12_S12_L003_R1_001, 12_S12_L003_R2_001, 12_S12_L004_R1_001, 12_S12_L004_R2_001


genotype: LCS- ancestor
folder: Breseq/Line_17_mutS
ref: AM181176
read_files:
174_S25_L001_R1_001, 174_S25_L001_R2_001, 174_S25_L002_R1_001, 174_S25_L002_R2_001, 174_S25_L003_R1_001, 174_S25_L003_R2_001, 174_S25_L004_R1_001, 174_S25_L004_R2_001, WT_Q1_59_S174_L002_R1_001, WT_Q1_59_S174_L002_R2_001, WT_Q1_59_S174_L004_R2_001


genotype: S-LCS+:9-II-d6→10-I-d6
folder: Breseq/PE-9-L17-s-d6
ref: AM181176
parent: S-LCS+_9-II-d6
read_files:
22_S22_L001_R1_001, 22_S22_L001_R2_001, 22_S22_L002_R1_001, 22_S22_L002_R2_001, 22_S22_L003_R1_001, 22_S22_L003_R2_001, 22_S22_L004_R1_001, 22_S22_L004_R2_001


genotype: S-LCS+:7-II-d6→8-I-d6
folder: Breseq/PE-7-L17-s-d6
ref: AM181176
parent: S-LCS+_7-II-d6
read_files:
18_S18_L001_R1_001, 18_S18_L001_R2_001, 18_S18_L002_R1_001, 18_S18_L002_R2_001, 18_S18_L003_R1_001, 18_S18_L003_R2_001, 18_S18_L004_R1_001, 18_S18_L004_R2_001


genotype: S-LCS-: 10-II-b8→
folder: Breseq/WT_s/WT_b8
ref: AM181176
parent: S-LCS-_10-II-b8
read_files:
WT_b8_S12_L001_R1_001, WT_b8_S12_L001_R2_001, WT_b8_S12_L002_R1_001, WT_b8_S12_L002_R2_001, WT_b8_S12_L003_R1_001, WT_b8_S12_L003_R2_001


genotype: S-LCS-: 10-II-d7→
folder: Breseq/WT_s/WT_d7
ref: AM181176
parent: S-LCS-_10-II-d7
read_files:
WT_d7_S21_L001_R1_001, WT_d7_S21_L001_R2_001, WT_d7_S21_L002_R2_001, WT_d7_S21_L003_R2_001, WT_d7_S21_L004_R2_001


genotype: S-LCS-: 10-II-e3→
folder: Breseq/WT_s/WT_e3
ref: AM181176
parent: S-LCS-_10-II-e3
read_files:
WT_e3_S24_L001_R2_001, WT_e3_S24_L002_R1_001, WT_e3_S24_L002_R2_001, WT_e3_S24_L003_R1_001, WT_e3_S24_L003_R2_001, WT_e3_S24_L004_R2_001


genotype: S-LCS-: 10-II-a8→
folder: Breseq/WT_s/WT_a8
ref: AM181176
parent: S-LCS-_10-II-a8
read_files:
WT_a8_S8_L001_R1_001, WT_a8_S8_L001_R2_001, WT_a8_S8_L002_R1_001, WT_a8_S8_L003_R1_001, WT_a8_S8_L003_R2_001, WT_a8_S8_L004_R1_001, WT_a8_S8_L004_R2_001


genotype: S-LCS-: 10-II-c5→
folder: Breseq/WT_s/WT_c5
ref: AM181176
parent: S-LCS-_10-II-c5
read_files:
WT_c5_S17_L001_R1_001, WT_c5_S17_L001_R2_001, WT_c5_S17_L002_R2_001, WT_c5_S17_L004_R1_001, WT_c5_S17_L004_R2_001


genotype: S-LCS-: 10-II-a3→
folder: Breseq/WT_s/WT_a3
ref: AM181176
parent: S-LCS-_10-II-a3
read_files:
WT_a3_S3_L001_R1_001, WT_a3_S3_L001_R2_001, WT_a3_S3_L002_R1_001, WT_a3_S3_L003_R1_001, WT_a3_S3_L003_R2_001, WT_a3_S3_L004_R1_001, WT_a3_S3_L004_R2_001


genotype: S-LCS-: 10-II-b3→
folder: Breseq/WT_s/WT_b3
ref: AM181176
parent: S-LCS-_10-II-b3
read_files:
WT_b3_S11_L001_R1_001, WT_b3_S11_L002_R1_001, WT_b3_S11_L002_R2_001, WT_b3_S11_L003_R2_001, WT_b3_S11_L004_R1_001, WT_b3_S11_L004_R2_001


genotype: S-LCS-: 10-II-c4→
folder: Breseq/WT_s/WT_c4
ref: AM181176
parent: S-LCS-_10-II-c4
read_files:
WT_c4_S16_L001_R1_001, WT_c4_S16_L001_R2_001, WT_c4_S16_L002_R1_001, WT_c4_S16_L002_R2_001, WT_c4_S16_L003_R1_001, WT_c4_S16_L004_R2_001


genotype: S-LCS-: 10-II-c1→
folder: Breseq/WT_s/WT_c1
ref: AM181176
parent: S-LCS-_10-II-c1
read_files:
WT_c1_S13_L001_R2_001, WT_c1_S13_L002_R1_001, WT_c1_S13_L002_R2_001, WT_c1_S13_L003_R1_001, WT_c1_S13_L003_R2_001, WT_c1_S13_L004_R1_001, WT_c1_S13_L004_R2_001


genotype: S-LCS-: 10-II-e8→
folder: Breseq/WT_s/WT_e8
ref: AM181176
parent: S-LCS-_10-II-e8
read_files:
WT_e8_S29_L001_R1_001, WT_e8_S29_L002_R1_001, WT_e8_S29_L003_R1_001, WT_e8_S29_L003_R2_001, WT_e8_S29_L004_R2_001


genotype: S-LCS-: 10-II-c3→
folder: Breseq/WT_s/WT_c3
ref: AM181176
parent: S-LCS-_10-II-c3
read_files:
WT_c3_S15_L001_R1_001, WT_c3_S15_L001_R2_001, WT_c3_S15_L002_R1_001, WT_c3_S15_L003_R1_001, WT_c3_S15_L003_R2_001, WT_c3_S15_L004_R1_001, WT_c3_S15_L004_R2_001


genotype: S-LCS-: 10-II-e4→
folder: Breseq/WT_s/WT_e4
ref: AM181176
parent: S-LCS-_10-II-e4
read_files:
WT_e4_S25_L001_R1_001, WT_e4_S25_L001_R2_001, WT_e4_S25_L002_R2_001, WT_e4_S25_L003_R1_001, WT_e4_S25_L003_R2_001, WT_e4_S25_L004_R1_001, WT_e4_S25_L004_R2_001


genotype: S-LCS-: 10-II-b2→
folder: Breseq/WT_s/WT_b2
ref: AM181176
parent: S-LCS-_10-II-b2
read_files:
WT_b2_S10_L001_R1_001, WT_b2_S10_L001_R2_001, WT_b2_S10_L002_R1_001, WT_b2_S10_L003_R1_001, WT_b2_S10_L004_R1_001


genotype: S-LCS-: 10-II-a6→
folder: Breseq/WT_s/WT_a6
ref: AM181176
parent: S-LCS-_10-II-a6
read_files:
WT_a6_S6_L001_R1_001, WT_a6_S6_L001_R2_001, WT_a6_S6_L002_R2_001, WT_a6_S6_L003_R1_001, WT_a6_S6_L004_R1_001, WT_a6_S6_L004_R2_001


genotype: S-LCS-: 10-II-e7→
folder: Breseq/WT_s/WT_e7
ref: AM181176
parent: S-LCS-_10-II-e7
read_files:
WT_e7_S28_L001_R1_001, WT_e7_S28_L001_R2_001, WT_e7_S28_L002_R2_001, WT_e7_S28_L003_R1_001, WT_e7_S28_L003_R2_001, WT_e7_S28_L004_R2_001


genotype: S-LCS-: 10-II-f1→
folder: Breseq/WT_s/WT_f1
ref: AM181176
parent: S-LCS-_10-II-f1
read_files:
WT_f1_S30_L001_R1_001, WT_f1_S30_L001_R2_001, WT_f1_S30_L002_R1_001, WT_f1_S30_L004_R1_001, WT_f1_S30_L004_R2_001


genotype: S-LCS-: 10-II-f4→
folder: Breseq/WT_s/WT_f4
ref: AM181176
parent: S-LCS-_10-II-f4
read_files:
WT_f4_S33_L002_R1_001, WT_f4_S33_L003_R1_001, WT_f4_S33_L003_R2_001, WT_f4_S33_L004_R1_001, WT_f4_S33_L004_R2_001


genotype: S-LCS-: 10-II-f2→
folder: Breseq/WT_s/WT_f2
ref: AM181176
parent: S-LCS-_10-II-f2
read_files:
WT_f2_S31_L001_R1_001, WT_f2_S31_L001_R2_001, WT_f2_S31_L002_R1_001, WT_f2_S31_L002_R2_001, WT_f2_S31_L003_R1_001, WT_f2_S31_L003_R2_001, WT_f2_S31_L004_R1_001, WT_f2_S31_L004_R2_001


genotype: S-LCS-: 10-II-a1→
folder: Breseq/WT_s/WT_a1
ref: AM181176
parent: S-LCS-_10-II-a1
read_files:
WT_a1_S1_L001_R1_001, WT_a1_S1_L001_R2_001, WT_a1_S1_L002_R2_001, WT_a1_S1_L003_R1_001, WT_a1_S1_L004_R2_001


genotype: S-LCS-: 10-II-a5→
folder: Breseq/WT_s/WT_a5
ref: AM181176
parent: S-LCS-_10-II-a5
read_files:
WT_a5_S5_L001_R1_001, WT_a5_S5_L002_R1_001, WT_a5_S5_L002_R2_001, WT_a5_S5_L003_R2_001, WT_a5_S5_L004_R1_001, WT_a5_S5_L004_R2_001


genotype: S-LCS-: 10-II-f8→
folder: Breseq/WT_s/WT_f8
ref: AM181176
parent: S-LCS-_10-II-f8
read_files:
WT_f8_S37_L002_R1_001, WT_f8_S37_L002_R2_001, WT_f8_S37_L003_R1_001, WT_f8_S37_L003_R2_001, WT_f8_S37_L004_R1_001, WT_f8_S37_L004_R2_001


genotype: S-LCS-: 10-II-b1→
folder: Breseq/WT_s/WT_b1
ref: AM181176
parent: S-LCS-_10-II-b1
read_files:
WT_b1_S9_L001_R1_001, WT_b1_S9_L001_R2_001, WT_b1_S9_L002_R1_001, WT_b1_S9_L003_R1_001, WT_b1_S9_L003_R2_001, WT_b1_S9_L004_R1_001, WT_b1_S9_L004_R2_001


genotype: S-LCS-: 10-II-e5→
folder: Breseq/WT_s/WT_e5
ref: AM181176
parent: S-LCS-_10-II-e5
read_files:
WT_e5_S26_L001_R1_001, WT_e5_S26_L001_R2_001, WT_e5_S26_L002_R1_001, WT_e5_S26_L002_R2_001, WT_e5_S26_L003_R1_001, WT_e5_S26_L003_R2_001, WT_e5_S26_L004_R1_001


genotype: S-LCS-: 10-II-f3→
folder: Breseq/WT_s/WT_f3
ref: AM181176
parent: S-LCS-_10-II-f3
read_files:
WT_f3_S32_L001_R1_001, WT_f3_S32_L001_R2_001, WT_f3_S32_L002_R2_001, WT_f3_S32_L003_R1_001, WT_f3_S32_L003_R2_001, WT_f3_S32_L004_R2_001


genotype: S-LCS-: 10-II-e2→
folder: Breseq/WT_s/WT_e2
ref: AM181176
parent: S-LCS-_10-II-e2
read_files:
WT_e2_S23_L001_R1_001, WT_e2_S23_L002_R1_001, WT_e2_S23_L003_R1_001, WT_e2_S23_L003_R2_001, WT_e2_S23_L004_R1_001, WT_e2_S23_L004_R2_001


genotype: S-LCS-: 10-II-c7→
folder: Breseq/WT_s/WT_c7
ref: AM181176
parent: S-LCS-_10-II-c7
read_files:
WT_c7_S19_L001_R2_001, WT_c7_S19_L002_R1_001, WT_c7_S19_L002_R2_001, WT_c7_S19_L003_R1_001, WT_c7_S19_L004_R1_001, WT_c7_S19_L004_R2_001


genotype: S-LCS-: 10-II-c6→
folder: Breseq/WT_s/WT_c6
ref: AM181176
parent: S-LCS-_10-II-c6
read_files:
WT_c6_S18_L001_R1_001, WT_c6_S18_L001_R2_001, WT_c6_S18_L002_R1_001, WT_c6_S18_L002_R2_001, WT_c6_S18_L003_R1_001, WT_c6_S18_L004_R1_001, WT_c6_S18_L004_R2_001


genotype: S-LCS-: 10-II-e1→
folder: Breseq/WT_s/WT_e1
ref: AM181176
parent: S-LCS-_10-II-e1
read_files:
WT_e1_S22_L001_R1_001, WT_e1_S22_L001_R2_001, WT_e1_S22_L002_R1_001, WT_e1_S22_L002_R2_001, WT_e1_S22_L003_R1_001, WT_e1_S22_L003_R2_001, WT_e1_S22_L004_R1_001, WT_e1_S22_L004_R2_001


genotype: S-LCS-: 10-II-f6→
folder: Breseq/WT_s/WT_f6
ref: AM181176
parent: S-LCS-_10-II-f6
read_files:
WT_f6_S35_L001_R1_001, WT_f6_S35_L001_R2_001, WT_f6_S35_L002_R1_001, WT_f6_S35_L003_R1_001, WT_f6_S35_L004_R1_001, WT_f6_S35_L004_R2_001


genotype: S-LCS-: 10-II-d5→
folder: Breseq/WT_s/WT_d5
ref: AM181176
parent: S-LCS-_10-II-d5
read_files:
WT_d5_S20_L001_R1_001, WT_d5_S20_L001_R2_001, WT_d5_S20_L002_R1_001, WT_d5_S20_L003_R1_001, WT_d5_S20_L003_R2_001


genotype: S-LCS-: 10-II-a2→
folder: Breseq/WT_s/WT_a2
ref: AM181176
parent: S-LCS-_10-II-a2
read_files:
WT_a2_S2_L001_R1_001, WT_a2_S2_L001_R2_001, WT_a2_S2_L002_R1_001, WT_a2_S2_L002_R2_001, WT_a2_S2_L003_R1_001, WT_a2_S2_L003_R2_001, WT_a2_S2_L004_R2_001


genotype: S-LCS+:8-II-d3→9-I-d3
folder: Breseq/PE-8-L17-s-d3
ref: AM181176
parent: S-LCS+_8-II-d3
read_files:
19_S19_L001_R1_001, 19_S19_L001_R2_001, 19_S19_L002_R1_001, 19_S19_L002_R2_001, 19_S19_L003_R1_001, 19_S19_L003_R2_001, 19_S19_L004_R1_001, 19_S19_L004_R2_001


genotype: L-LCS-:2-II-A5→3-I-A5
folder: Breseq/PE-2-WT-L-A5
ref: AM181176
parent: L-LCS-_2-II-A5
read_files:
2_S2_L001_R1_001, 2_S2_L001_R2_001, 2_S2_L002_R1_001, 2_S2_L002_R2_001, 2_S2_L003_R1_001, 2_S2_L003_R2_001, 2_S2_L004_R1_001, 2_S2_L004_R2_001


genotype: S-LCS+:6-II-d3→7-I-d3
folder: Breseq/PE-6-L17-s-d3
ref: AM181176
parent: S-LCS+_6-II-d3
read_files:
15_S15_L001_R1_001, 15_S15_L001_R2_001, 15_S15_L002_R1_001, 15_S15_L002_R2_001, 15_S15_L003_R1_001, 15_S15_L003_R2_001, 15_S15_L004_R1_001, 15_S15_L004_R2_001


genotype: S-LCS+:2-II-d2→3-I-d2
folder: Breseq/PE-2-L17-s-d2
ref: AM181176
parent: S-LCS+_2-II-d2
read_files:
11_S11_L001_R1_001, 11_S11_L001_R2_001, 11_S11_L002_R1_001, 11_S11_L002_R2_001, 11_S11_L003_R1_001, 11_S11_L003_R2_001, 11_S11_L004_R1_001, 11_S11_L004_R2_001


genotype: S-LCS+:9-II-d8→10-I-d8
folder: Breseq/PE-9-L17-s-d8
ref: AM181176
parent: S-LCS+_9-II-d8
read_files:
23_S23_L001_R1_001, 23_S23_L001_R2_001, 23_S23_L002_R1_001, 23_S23_L002_R2_001, 23_S23_L003_R1_001, 23_S23_L003_R2_001, 23_S23_L004_R1_001, 23_S23_L004_R2_001


genotype: L-LCS-:3-II-A1→4-I-A1
folder: Breseq/PE-3-WT-L-A1
ref: AM181176
parent: L-LCS-_3-II-A1
read_files:
6_S6_L001_R1_001, 6_S6_L001_R2_001, 6_S6_L002_R1_001, 6_S6_L002_R2_001, 6_S6_L003_R1_001, 6_S6_L003_R2_001, 6_S6_L004_R1_001, 6_S6_L004_R2_001


genotype: S-LCS+:1-II-d2→2-I-d2
folder: Breseq/PE-1-L17-s-d2
ref: AM181176
parent: S-LCS+_1-II-d2
read_files:
10_S10_L001_R1_001, 10_S10_L001_R2_001, 10_S10_L002_R1_001, 10_S10_L002_R2_001, 10_S10_L003_R1_001, 10_S10_L003_R2_001, 10_S10_L004_R1_001, 10_S10_L004_R2_001


genotype: L-LCS+: 10-II-F1→
folder: Breseq/17_L/17_F1
ref: AM181176
parent: L-LCS+_10-II-F1
read_files:
17_F1_S167_L001_R1_001, 17_F1_S167_L001_R2_001, 17_F1_S167_L002_R1_001, 17_F1_S167_L003_R1_001, 17_F1_S167_L004_R1_001, 17_F1_S167_L004_R2_001


genotype: L-LCS+: 10-II-A2→
folder: Breseq/17_L/17_A2
ref: AM181176
parent: L-LCS+_10-II-A2
read_files:
17_A2_S130_L001_R2_001, 17_A2_S130_L002_R2_001, 17_A2_S130_L003_R1_001, 17_A2_S130_L003_R2_001, 17_A2_S130_L004_R1_001, 17_A2_S130_L004_R2_001


genotype: L-LCS+: 10-II-D3→
folder: Breseq/17_L/17_D3
ref: AM181176
parent: L-LCS+_10-II-D3
read_files:
17_D3_S153_L001_R2_001, 17_D3_S153_L002_R1_001, 17_D3_S153_L003_R1_001, 17_D3_S153_L003_R2_001, 17_D3_S153_L004_R1_001, 17_D3_S153_L004_R2_001


genotype: L-LCS+: 10-II-F3→
folder: Breseq/17_L/17_F3
ref: AM181176
parent: L-LCS+_10-II-F3
read_files:
17_F3_S168_L001_R1_001, 17_F3_S168_L002_R1_001, 17_F3_S168_L002_R2_001, 17_F3_S168_L003_R1_001, 17_F3_S168_L003_R2_001, 17_F3_S168_L004_R1_001, 17_F3_S168_L004_R2_001


genotype: L-LCS+: 10-II-D5→
folder: Breseq/17_L/17_D5
ref: AM181176
parent: L-LCS+_10-II-D5
read_files:
17_D5_S150_L001_R1_001, 17_D5_S150_L001_R2_001, 17_D5_S150_L002_R1_001, 17_D5_S150_L003_R1_001, 17_D5_S150_L004_R1_001, 17_D5_S150_L004_R2_001


genotype: L-LCS+: 10-II-C6→
folder: Breseq/17_L/17_C6
ref: AM181176
parent: L-LCS+_10-II-C6
read_files:
17_C6_S144_L001_R2_001, 17_C6_S144_L002_R1_001, 17_C6_S144_L002_R2_001, 17_C6_S144_L004_R1_001, 17_C6_S144_L004_R2_001


genotype: L-LCS+: 10-II-E6→
folder: Breseq/17_L/17_E6
ref: AM181176
parent: L-LCS+_10-II-E6
read_files:
17_E6_S164_L001_R1_001, 17_E6_S164_L001_R2_001, 17_E6_S164_L002_R1_001, 17_E6_S164_L002_R2_001, 17_E6_S164_L003_R1_001, 17_E6_S164_L003_R2_001, 17_E6_S164_L004_R1_001, 17_E6_S164_L004_R2_001


genotype: L-LCS+: 10-II-F8→
folder: Breseq/17_L/17_F8
ref: AM181176
parent: L-LCS+_10-II-F8
read_files:
17_F8_S173_L001_R1_001, 17_F8_S173_L001_R2_001, 17_F8_S173_L002_R1_001, 17_F8_S173_L002_R2_001, 17_F8_S173_L003_R2_001, 17_F8_S173_L004_R2_001


genotype: L-LCS+: 10-II-E4→
folder: Breseq/17_L/17_E4
ref: AM181176
parent: L-LCS+_10-II-E4
read_files:
17_E4_S162_L001_R1_001, 17_E4_S162_L001_R2_001, 17_E4_S162_L003_R2_001, 17_E4_S162_L004_R1_001, 17_E4_S162_L004_R2_001


genotype: L-LCS+: 10-II-D2→
folder: Breseq/17_L/17_D2
ref: AM181176
parent: L-LCS+_10-II-D2
read_files:
17_D2_S152_L001_R1_001, 17_D2_S152_L001_R2_001, 17_D2_S152_L002_R1_001, 17_D2_S152_L002_R2_001, 17_D2_S152_L003_R1_001, 17_D2_S152_L003_R2_001, 17_D2_S152_L004_R2_001


genotype: L-LCS+: 10-II-E5→
folder: Breseq/17_L/17_E5
ref: AM181176
parent: L-LCS+_10-II-E5
read_files:
17_E5_S163_L002_R1_001, 17_E5_S163_L002_R2_001, 17_E5_S163_L003_R1_001, 17_E5_S163_L004_R1_001, 17_E5_S163_L004_R2_001


genotype: L-LCS+: 10-II-F5→
folder: Breseq/17_L/17_F5
ref: AM181176
parent: L-LCS+_10-II-F5
read_files:
17_F5_S170_L001_R1_001, 17_F5_S170_L001_R2_001, 17_F5_S170_L002_R1_001, 17_F5_S170_L003_R2_001, 17_F5_S170_L004_R2_001


genotype: L-LCS+: 10-II-E3→
folder: Breseq/17_L/17_E3
ref: AM181176
parent: L-LCS+_10-II-E3
read_files:
17_E3_S161_L001_R1_001, 17_E3_S161_L002_R1_001, 17_E3_S161_L002_R2_001, 17_E3_S161_L003_R1_001, 17_E3_S161_L003_R2_001, 17_E3_S161_L004_R1_001, 17_E3_S161_L004_R2_001


genotype: L-LCS+: 10-II-B6→
folder: Breseq/17_L/17_B6
ref: AM181176
parent: L-LCS+_10-II-B6
read_files:
17_B6_S141_L001_R1_001, 17_B6_S141_L001_R2_001, 17_B6_S141_L002_R2_001, 17_B6_S141_L003_R1_001, 17_B6_S141_L003_R2_001, 17_B6_S141_L004_R1_001, 17_B6_S141_L004_R2_001


genotype: L-LCS+: 10-II-A8→
folder: Breseq/17_L/17_A8
ref: AM181176
parent: L-LCS+_10-II-A8
read_files:
17_A8_S136_L001_R1_001, 17_A8_S136_L002_R1_001, 17_A8_S136_L002_R2_001, 17_A8_S136_L003_R1_001, 17_A8_S136_L004_R1_001, 17_A8_S136_L004_R2_001


genotype: L-LCS+: 10-II-C7→
folder: Breseq/17_L/17_C7
ref: AM181176
parent: L-LCS+_10-II-C7
read_files:
17_C7_S146_L001_R1_001, 17_C7_S146_L001_R2_001, 17_C7_S146_L002_R1_001, 17_C7_S146_L002_R2_001, 17_C7_S146_L004_R1_001, 17_C7_S146_L004_R2_001


genotype: L-LCS+: 10-II-A1→
folder: Breseq/17_L/17_A1
ref: AM181176
parent: L-LCS+_10-II-A1
read_files:
17_A1_S129_L001_R2_001, 17_A1_S129_L002_R1_001, 17_A1_S129_L002_R2_001, 17_A1_S129_L003_R1_001, 17_A1_S129_L003_R2_001, 17_A1_S129_L004_R1_001


genotype: L-LCS+: 10-II-D6→
folder: Breseq/17_L/17_D6
ref: AM181176
parent: L-LCS+_10-II-D6
read_files:
17_D6_S156_L001_R1_001, 17_D6_S156_L002_R1_001, 17_D6_S156_L003_R2_001, 17_D6_S156_L004_R1_001, 17_D6_S156_L004_R2_001


genotype: L-LCS+: 10-II-B7→
folder: Breseq/17_L/17_B7
ref: AM181176
parent: L-LCS+_10-II-B7
read_files:
17_B7_S142_L001_R1_001, 17_B7_S142_L001_R2_001, 17_B7_S142_L002_R1_001, 17_B7_S142_L003_R2_001, 17_B7_S142_L004_R1_001


genotype: L-LCS+: 10-II-C2→
folder: Breseq/17_L/17_C2
ref: AM181176
parent: L-LCS+_10-II-C2
read_files:
17_C2_S154_L001_R1_001, 17_C2_S154_L001_R2_001, 17_C2_S154_L002_R2_001, 17_C2_S154_L004_R1_001, 17_C2_S154_L004_R2_001


genotype: L-LCS+: 10-II-E1→
folder: Breseq/17_L/17_E1
ref: AM181176
parent: L-LCS+_10-II-E1
read_files:
17_E1_S159_L001_R1_001, 17_E1_S159_L001_R2_001, 17_E1_S159_L002_R1_001, 17_E1_S159_L002_R2_001, 17_E1_S159_L003_R1_001, 17_E1_S159_L003_R2_001, 17_E1_S159_L004_R1_001, 17_E1_S159_L004_R2_001


genotype: L-LCS+: 10-II-B8→
folder: Breseq/17_L/17_B8
ref: AM181176
parent: L-LCS+_10-II-B8
read_files:
17_B8_S143_L001_R1_001, 17_B8_S143_L001_R2_001, 17_B8_S143_L002_R2_001, 17_B8_S143_L003_R1_001, 17_B8_S143_L003_R2_001, 17_B8_S143_L004_R1_001, 17_B8_S143_L004_R2_001


genotype: L-LCS+: 10-II-A4→
folder: Breseq/17_L/17_A4
ref: AM181176
parent: L-LCS+_10-II-A4
read_files:
17_A4_S132_L001_R2_001, 17_A4_S132_L002_R1_001, 17_A4_S132_L002_R2_001, 17_A4_S132_L003_R2_001, 17_A4_S132_L004_R2_001


genotype: L-LCS+: 10-II-E7→
folder: Breseq/17_L/17_E7
ref: AM181176
parent: L-LCS+_10-II-E7
read_files:
17_E7_S165_L001_R1_001, 17_E7_S165_L003_R1_001, 17_E7_S165_L003_R2_001, 17_E7_S165_L004_R1_001, 17_E7_S165_L004_R2_001


genotype: L-LCS+: 10-II-B4→
folder: Breseq/17_L/17_B4
ref: AM181176
parent: L-LCS+_10-II-B4
read_files:
17_B4_S139_L001_R2_001, 17_B4_S139_L002_R2_001, 17_B4_S139_L003_R2_001, 17_B4_S139_L004_R1_001, 17_B4_S139_L004_R2_001


genotype: L-LCS+: 10-II-C8→
folder: Breseq/17_L/17_C8
ref: AM181176
parent: L-LCS+_10-II-C8
read_files:
17_C8_S147_L002_R1_001, 17_C8_S147_L002_R2_001, 17_C8_S147_L003_R2_001, 17_C8_S147_L004_R1_001, 17_C8_S147_L004_R2_001


genotype: L-LCS+: 10-II-D4→
folder: Breseq/17_L/17_D4
ref: AM181176
parent: L-LCS+_10-II-D4
read_files:
17_D4_S149_L001_R1_001, 17_D4_S149_L001_R2_001, 17_D4_S149_L002_R1_001, 17_D4_S149_L002_R2_001, 17_D4_S149_L003_R1_001, 17_D4_S149_L003_R2_001, 17_D4_S149_L004_R2_001


genotype: L-LCS+: 10-II-E2→
folder: Breseq/17_L/17_E2
ref: AM181176
parent: L-LCS+_10-II-E2
read_files:
17_E2_S160_L002_R1_001, 17_E2_S160_L002_R2_001, 17_E2_S160_L003_R1_001, 17_E2_S160_L004_R1_001, 17_E2_S160_L004_R2_001


genotype: L-LCS+: 10-II-B3→
folder: Breseq/17_L/17_B3
ref: AM181176
parent: L-LCS+_10-II-B3
read_files:
17_B3_S151_L001_R1_001, 17_B3_S151_L001_R2_001, 17_B3_S151_L002_R1_001, 17_B3_S151_L002_R2_001, 17_B3_S151_L003_R1_001, 17_B3_S151_L004_R1_001


genotype: L-LCS+: 10-II-A7→
folder: Breseq/17_L/17_A7
ref: AM181176
parent: L-LCS+_10-II-A7
read_files:
17_A7_S135_L001_R1_001, 17_A7_S135_L001_R2_001, 17_A7_S135_L002_R1_001, 17_A7_S135_L002_R2_001, 17_A7_S135_L003_R1_001, 17_A7_S135_L003_R2_001


genotype: L-LCS+: 10-II-B2→
folder: Breseq/17_L/17_B2
ref: AM181176
parent: L-LCS+_10-II-B2
read_files:
17_B2_S138_L001_R2_001, 17_B2_S138_L002_R1_001, 17_B2_S138_L002_R2_001, 17_B2_S138_L003_R1_001, 17_B2_S138_L004_R2_001


# mutations

mut_id: MUT_0118
mutation: A→G
annotation: intergenic (+20/‑127)
gene:
match to PP 1..777 blast score 1273 percent identity 96 23S rRNA → / → match to PS 1..120 blast score 214 percent identity 98 5S rRNA

description:
match to PP 1..777 blast score 1273 percent identity 96 23S rRNA/match to PS 1..120 blast score 214 percent identity 98 5S rRNA


mut_id: MUT_0264
mutation: A→G
annotation: intergenic (‑217/‑72)
gene: PFLU_0200 ← / → PFLU_0201
description:
putative ABC sulfur transport system, membrane protein/putative ABC sulfu transport system, substrate‑binding protein


mut_id: MUT_0341
mutation: T→C
annotation: intergenic (‑9/+261)
gene: tauA ← / ← gshA
description:
taurine ABC transport system, substrate‑binding periplasmic protein precursor/glutamate‑‑cysteine ligase


mut_id: MUT_0448
mutation: A→G
annotation: I3V (ATT→GTT)
gene: hisA →
description:
1‑(5‑phosphoribosyl)‑5‑[(5‑phosphoribosylamino) me thylideneamino] imidazole‑4‑carboxamide isomerase


mut_id: MUT_0461
mutation: (C)7→6
annotation: intergenic (‑102/‑47)
gene: gpmI ← / → PFLU_0338
description:
2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase/putative rhodanese domain containing protein


mut_id: MUT_0554
mutation: C→T
annotation: intergenic (+11/‑125)
gene: PFLU_0409 → / → PFLU_0410
description:
putative fimbriae biogenesis‑related fusion protein/putative fimbriae biogenesis‑related protein (pseudogene)


mut_id: MUT_0637
mutation: A→G
annotation: intergenic (+134/‑9)
gene: PFLU_0470 → / → PFLU_0471
description:
putative ABC transport system, ATP‑binding protein (pseudogene)/putative ABC transport system, permease protein


mut_id: MUT_0774
mutation: A→G
annotation: intergenic (‑2/+205)
gene: pncB ← / ← PFLU_0548
description:
nicotinate phosphoribosyltransferase (ec 2.4.2.11) (naprtase)/putative LysR‑family regulatory protein


mut_id: MUT_0781
mutation: T→C
annotation: intergenic (+65/‑310)
gene: PFLU_0550 → / → livJ2
description:
putative oxidoreductase/putative branched amino acid ABC transport system, substrate‑binding protein


mut_id: MUT_0887
mutation: A→G
annotation: intergenic (+111/‑3)
gene: PFLU_0607 → / → PFLU_0608
description:
putative precorrin‑3B C17‑methyltransferase, cobalamin biosynthesis protein/conserved hypothetical protein


mut_id: MUT_1009
mutation: A→G
annotation: intergenic (+167/‑454)
gene: mmsA → / → match to PA 1..1537 blast score 2409 percent identity 95 16S rRNA
description:
methylmalonate‑semialdehyde dehydrogenase/match to PA 1..1537 blast score 2409 percent identity 95 16S rRNA


mut_id: MUT_1136
mutation: (C)6→7
annotation: intergenic (+43/‑139)
gene: yaaD → / → ispH
description:
probable FKBP‑type 16 kDa peptidyl‑prolyl cis‑trans isomerase/4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase


mut_id: MUT_1198
mutation: A→G
annotation: M1T (ATG→ACG) † *218R (TGA→CGA)
gene: opuBA ← PFLU_0813 ←
description:
choline ABC transport system, ATP‑binding protein putative amino acid ABC transport system, membrane protein


mut_id: MUT_1224
mutation: C→T
annotation: intergenic (‑40/+219)
gene: dppA3 ← / ← dppA4
description:
dipeptide ABC transport system, substrate‑binding protein/dipeptide ABC transport system, substrate‑binding protein


mut_id: MUT_1425
mutation: C→T
annotation: N290N (AAC→AAT)
gene: murG →
description:
UDP‑N‑acetylglucosamine‑‑N‑acetylmuramyl‑(penta pe ptide) pyrophosphoryl‑undecaprenol n‑acetylglucosamine transferase


mut_id: MUT_1707
mutation: A→G
annotation: intergenic (‑1/+228)
gene: PFLU_1135 ← / ← gltL
description:
putative two‑component system, sensor kinase/glutamate/aspartate ABC transport system, ATP‑binding protein


mut_id: MUT_1715
mutation: G→A
annotation: intergenic (‑230/+75)
gene: gltI ← / ← glpD
description:
glutamate/aspartate ABC transport system, periplasmic binding protein precursor/aerobic glycerol‑3‑phosphate dehydrogenase


mut_id: MUT_1907
mutation: (G)7→8
annotation: intergenic (+251/‑459)
gene: wspR → / → PFLU_1226
description:
putative chemotaxis‑related, two component system response regulator/peptide chain release factor 2 (pseudogene)


mut_id: MUT_1974
mutation: (C)6→7
annotation: intergenic (+108/‑4)
gene: lpxD → / → fabZ
description:
UDP‑3‑O‑[3‑hydroxymyristoyl] glucosamine N‑acyltransferase/(3R)‑hydroxymyristoyl‑[acyl carrier protein] dehydratase


mut_id: MUT_1987
mutation: T→C
annotation: intergenic (+74/‑87)
gene: accA → / → PFLU_1287
description:
acetyl‑coenzyme A carboxylase carboxyl transferase subunit alpha/putative tRNA(Ile)‑lysidine synthase


mut_id: MUT_2436
mutation: (G)5→6
annotation: intergenic (+75/+32)
gene: PFLU_1574 → / ← PFLU_1575
description:
putative lipoprotein releasing system, membrane protein/putative heavy metal two‑component system, sensor kinase


mut_id: MUT_2559
mutation: T→C
annotation: V738A (GTC→GCC)
gene: PFLU_1647 →
description:
putative bifunctional protein (prephenate dehydrogenase + 3‑phosphoshikimate 1‑carboxyvinyltransferase)


mut_id: MUT_2702
mutation: (G)6→7
annotation: intergenic (‑9/+166)
gene: PFLU_1741 ← / ← PFLU_1742
description:
putative two‑component system, response regulator/putative deoxyguanosinetriphosphate triphosphohydrolase


mut_id: MUT_2712
mutation: T→C
annotation: intergenic (‑136/‑15)
gene: PFLU_1748 ← / → PFLU_1749
description:
putative glutathione‑regulated potassium‑efflux transport system, membrane protein/conserved hypothetical protein


mut_id: MUT_2716
mutation: (G)6→7
annotation: intergenic (‑30/‑47)
gene: PFLU_1753 ← / → moaB
description:
putative molybdopterin‑guanine dinucleotide biosynthesis protein A/molybdenum cofactor biosynthesis protein B


mut_id: MUT_2742
mutation: (G)8→10
annotation: intergenic (+165/‑149)
gene: PFLU_1776 → / → phnC
description:
putative phosphoglycerate mutase (pseudogene)/phosphonates ABC transport system, ATP‑binding protein


mut_id: MUT_2745
mutation: A→G
annotation: intergenic (+7/‑26)
gene: phnC → / → phnD
description:
phosphonates ABC transport system, ATP‑binding protein/phosphonates ABC transport system, substrate‑binding periplasmic protein precursor


mut_id: MUT_3233
mutation: (G)5→6
annotation: intergenic (‑30/+5)
gene: scoB ← / ← scoA
description:
succinyl‑CoA:3‑ketoacid‑coenzyme A transferase subunit B/probable succinyl‑CoA:3‑ketoacid‑coenzyme A transferase subunit A


mut_id: MUT_3328
mutation: (G)5→6
annotation: intergenic (‑227/‑30)
gene: PFLU_2229 ← / → PFLU_2230
description:
putative LysR‑family regulatory protein/putative ABC transport system, exported solute‑binding protein


mut_id: MUT_3396
mutation: A→G
annotation: intergenic (+4/‑8)
gene: PFLU_2282 → / → PFLU_2283
description:
putative ABC transport system, ATP‑binding protein/putative ABC transport system, ATP‑binding protein


mut_id: MUT_3475
mutation: C→G
annotation: intergenic (+609/+908)
gene: PFLU_2327 → / ← PFLU_2328
description:
ammonia channel precursor (ammonia transporter)/putative histidine biosynthesis‑related tetrahydrofolate dehydrogenase


mut_id: MUT_3479
mutation: G→A
annotation: intergenic (‑2/+63)
gene: PFLU_2328 ← / ← PFLU_2329
description:
putative histidine biosynthesis‑related tetrahydrofolate dehydrogenase/putative amino acid transport‑related protein


mut_id: MUT_3532
mutation: C→T
annotation: intergenic (+32/‑26)
gene: araF → / → araG
description:
L‑arabinose ABC transport system, substrate‑binding periplasmic protein/L‑arabinose ABC transport system, ATP‑binding protein


mut_id: MUT_3585
mutation: G→A
annotation: intergenic (‑99/‑50)
gene: PFLU_2418 ← / → PFLU_2419
description:
putative type II secretion system, exported protein I/putative type II secretion pathway protein G precursor


mut_id: MUT_3908
mutation: C→T
annotation: intergenic (+31/‑103)
gene: PFLU_2591 → / → PFLU_2592
description:
conserved hypothetical protein/glycine betaine/L‑proline ABC transporter, substrate‑binding periplasmic protein


mut_id: MUT_3945
mutation: A→G
annotation: intergenic (‑288/‑46)
gene: PFLU_2616 ← / → PFLU_2617
description:
putative exported protein/putative ABC‑type amino‑acid transporter periplasmic solute‑binding protein


mut_id: MUT_3965
mutation: C→T
annotation: intergenic (‑26/+34)
gene: PFLU_2630 ← / ← PFLU_2631
description:
putative sigma‑54 dependent transcriptional regulator/putative ABC transport system, ATP‑binding protein


mut_id: MUT_4015
mutation: C→T
annotation: intergenic (‑103/‑63)
gene: PFLU_2662 ← / → PFLU_2663
description:
5‑Methyltetrahydrofolate‑‑homocysteine methyltransferase/putative exported fatty acid cis/trans isomerase


mut_id: MUT_4392
mutation: (G)5→6
annotation: coding (1931/2316 nt)
gene: PFLU_2937 ←
description:
putative aerobic respiration sensor‑response protein, histidine protein kinase/phosphatase, sensor for arcA


mut_id: MUT_4402
mutation: (G)6→7
annotation: intergenic (‑23/‑261)
gene: PFLU_2942 ← / → PFLU_2943
description:
conserved hypothetical protein/putative branched‑chain amino acid ABC transporter, periplasmic amino acid‑binding protein


mut_id: MUT_4900
mutation: T→C
annotation: intergenic (‑32/+17)
gene: PFLU_3217 ← / ← PFLU_3218
description:
putative diaminobutyrate‑‑2‑oxoglutarate aminotransferase/putative TonB‑dependent outer membrane receptor


mut_id: MUT_5235
mutation: G→A
annotation: intergenic (+12/‑11)
gene: PFLU_3421 → / → PFLU_3422
description:
putative branched‑chain amino acid transport system permease/putative branched‑chain amino acid ABC transporter permease


mut_id: MUT_5587
mutation: G→A
annotation: intergenic (‑17/‑163)
gene: PFLU_3640 ← / → PFLU_3641
description:
conserved hypothetical protein/oxidative stress related two component system, transcriptional regulator


mut_id: MUT_5615
mutation: G→A
annotation: *247* (TGA→TAA) M1M (ATG→ATA) †
gene: PFLU_3653 → PFLU_3654 →
description:
putative two‑component response regulator transcriptional regulatory protein putative two‑component sensor histidine kinase transcriptional regulatory protein


mut_id: MUT_5616
mutation: (C)6→7
annotation: intergenic (+98/‑259)
gene: PFLU_3654 → / → PFLU_3655
description:
putative two‑component sensor histidine kinase transcriptional regulatory protein/hypothetical protein


mut_id: MUT_5707
mutation: A→G
annotation: intergenic (‑34/‑204)
gene: PFLU_3706 ← / → PFLU_3707
description:
putative LysR family transcriptional regulator/putative AraC‑family transcriptional regulator (pseudogene)


mut_id: MUT_5727
mutation: T→C
annotation: intergenic (‑207/‑18)
gene: PFLU_3721 ← / → PFLU_3722
description:
putative aliphatic sulfonates binding protein precursor/putative phosphorous compounds metabolism‑related protein


mut_id: MUT_5793
mutation: C→T
annotation: intergenic (+273/‑160)
gene: PFLU_3776 → / → PFLU_3777
description:
putative membrane protein/hybrid sensory histidine kinase in two‑component regulatory system with UvrY


mut_id: MUT_5898
mutation: C→T
annotation: R111C (CGC→TGC)
gene: phaG →
description:
probable k(+)/h(+) antiporter subunit g (ph adaptation potassium efflux system protein g) (pha system subunit g)


mut_id: MUT_5923
mutation: (C)5→6
annotation: intergenic (+51/+70)
gene: PFLU_3883 → / ← PFLU_3884
description:
putative phosphate‑related ABC transport system, exported protein/putative acyl‑CoA dehydrogenase family protein


mut_id: MUT_5982
mutation: G→A
annotation: intergenic (‑47/+128)
gene: PFLU_3927 ← / ← PFLU_3928
description:
DNA‑binding ATP‑dependent protease La, heat shock K‑protein/ATP‑dependent specificity component of clpP serine protease, chaperone


mut_id: MUT_6095
mutation: (C)5→6
annotation: coding (9/993 nt) coding (1483/1509 nt)
gene: PFLU_3994 ← PFLU_3995 ←
description:
putative sugar transport system, permease protein putative sugar transport system, ATP‑binding protein


mut_id: MUT_6388
mutation: 1 bp→CC
annotation: intergenic (‑211/+693)
gene: PFLU_4184 ← / ← PFLU_4186
description:
putative colicin V production protein/dihydrofolate:folylpolyglutamate synthetase, dihydrofolate synthetase


mut_id: MUT_6679
mutation: G→A
annotation: intergenic (+23/‑74)
gene: PFLU_4371 → / → PFLU_4372
description:
putative cell division topological specificity factor/ribosomal large subunit pseudouridine synthase A


mut_id: MUT_6767
mutation: T→C
annotation: intergenic (+93/‑68)
gene: PFLU_4396 → / → PFLU_4397
description:
putative enoyl‑CoA hydratase/isomerase/putative acetyl‑/propionyl‑coenzyme A carboxylase alpha chain protein


mut_id: MUT_6838
mutation: T→C
annotation: intergenic (‑129/+138)
gene: PFLU_4442 ← / ← PFLU_4443
description:
putative two‑component system, sensor kinase/putative two‑component system, response regulator nitrogen regulation protein NR(I)


mut_id: MUT_6870
mutation: T→C
annotation: intergenic (‑191/+157)
gene: PFLU_4456 ← / ← PFLU_4457
description:
flagellar basal‑body rod protein/transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport


mut_id: MUT_7194
mutation: T→C
annotation: intergenic (‑18/+243)
gene: PFLU_4652 ← / ← PFLU_4653
description:
putative glycine betaine/L‑proline‑binding protein ABC transporter component/conserved hypothetical protein


mut_id: MUT_7224
mutation: (C)5→6
annotation: intergenic (‑152/+32)
gene: PFLU_4681 ← / ← PFLU_4682
description:
putative IclR‑family regulatory protein/high‑affinity L‑arabinose transport protein (ABC superfamily, membrane)


mut_id: MUT_7263
mutation: T→C
annotation: intergenic (‑190/‑149)
gene: PFLU_4717 ← / → PFLU_4718
description:
citrate and C4‑dicarboxylic acids transport protein (DAACS family)/putative AraC family regulatory protein


mut_id: MUT_7266
mutation: G→A
annotation: intergenic (+10/+111)
gene: PFLU_4718 → / ← PFLU_4719
description:
putative AraC family regulatory protein/two‑component system sensor kinase, regulator of virulence determinants


mut_id: MUT_7333
mutation: G→A
annotation: intergenic (‑128/+107)
gene: PFLU_4756 ← / ← PFLU_4758
description:
putative arginine N‑succinyltransferase, alpha chain/acetylornithine/succinyldiaminopimelate aminotransferase


mut_id: MUT_7622
mutation: G→A
annotation: intergenic (‑102/+22)
gene: PFLU_4932 ← / ← PFLU_4933
description:
arginine biosynthesis bifunctional protein ArgJ/preprotein translocase, ATPase secretion component (General Secretory Pathway)


mut_id: MUT_7666
mutation: (G)5→6
annotation: intergenic (+38/‑249)
gene: PFLU_4954 → / → PFLU_4955
description:
putative two‑component system, response regulator for C4‑dicarboxylate transport/alpha‑ketoglutarate permease


mut_id: MUT_7893
mutation: +G
annotation: intergenic (+141/+419)
gene: PFLU_5087 → / ← PFLU_5088
description:
putative two‑component system, response regulator/putative chemotaxis two‑component system, response regulator protein‑glutamate methylesterase


mut_id: MUT_8000
mutation: (G)5→7
annotation: intergenic (‑95/+99)
gene: PFLU_5182 ← / ← PFLU_5183
description:
putative putative integral membrane sulphate transporter/putative putative polysaccharide synthesis protein


mut_id: MUT_8074
mutation: A→G
annotation: intergenic (+100/‑47)
gene:
match to PS 1..120 blast score 214 percent identity 98 5S rRNA → / → match to PP 1..2902 blast score 5043 percent identity 97 23S rRNA

description:
match to PS 1..120 blast score 214 percent identity 98 5S rRNA/match to PP 1..2902 blast score 5043 percent identity 97 23S rRNA


mut_id: MUT_8106
mutation: G→A
annotation: G60S (GGC→AGC)
gene: PFLU_5237 →
description:
putative response regulator in two‑component regulatory system with ZraS, regulates zraP expression (EBP family)


mut_id: MUT_8112
mutation: G→A
annotation: intergenic (+168/‑119)
gene: PFLU_5240 → / → PFLU_5241
description:
2‑amino‑4‑hydroxy‑6‑hydroxymethyldihydropteridi ne pyrophosphokinase/3‑methyl‑2‑oxobutanoate hydroxymethyltransferase


mut_id: MUT_8428
mutation: G→A
annotation: intergenic (‑24/+34)
gene: mpl ← / ← PFLU_5440
description:
UDP‑Nacetylmuramate:l‑alanyl‑gamma‑D‑glutamyl‑m es o‑diaminopimelate ligase/putative regulatory protein


mut_id: MUT_8552
mutation: T→C
annotation: E248E (GAA→GAG)
gene: birA ←
description:
bifunctional protein [includes: biotin operon repressor, biotin‑‑[acetyl‑CoA‑carboxylase] synthetase (biotin‑‑protein ligase)]


mut_id: MUT_8584
mutation: (C)5→6
annotation: intergenic (‑59/+156)
gene: PFLU_5568 ← / ← PFLU_5569
description:
putative ABC transport system, ATP‑binding protein/putative two‑component system, response regulator


mut_id: MUT_8617
mutation: G→A
annotation: A59A (GCG→GCA)
gene: cca →
description:
multifunctional cca protein [includes: cca‑adding enzyme (ec 2.7.7.25) (ec 2.7.7.21) (trna nucleotidyltransferase) (trna adenylyl‑/cytidylyl‑transferase) (trna cca‑pyrophosphorylase) (trna‑nt), 2'‑nucleotidase (ec 3.1.3.‑), 2',3'‑cyclic phosphodiesterase (ec 3.1.4.‑), phosphatase (ec 3.1.3.‑)]


mut_id: MUT_8623
mutation: T→C
annotation: intergenic (+104/‑18)
gene: rpoD → / → PFLU_5593
description:
RNA polymerase sigma factor (sigma‑70)/putative signalling GGDEF/EAL domains containing conserved protein


mut_id: MUT_8754
mutation: (C)5→6
annotation: intergenic (+118/+71)
gene: PFLU_5682 → / ← betT
description:
putative glycine betaine/L‑proline ABC transport system, ATP‑binding protein/high‑affinity choline ABC transport system, membrane protein


mut_id: MUT_8833
mutation: A→G
annotation: intergenic (‑72/+34)
gene: PFLU_5748 ← / ← pilJ
description:
putative sensor kinase/response regulatory fusion protein/type IV pilus biogenesis protein/tiwtiching mobility protein/methyl accepting chemotaxis‑related protein


mut_id: MUT_8835
mutation: T→C
annotation: D571G (GAC→GGC)
gene: pilJ ←
description:
type IV pilus biogenesis protein/tiwtiching mobility protein/methyl accepting chemotaxis‑related protein


mut_id: MUT_8967
mutation: (C)6→7
annotation: intergenic (‑85/+150)
gene: PFLU_5875 ← / ← PFLU_5876
description:
putative iron (III) ABC transport system, membrane protein/putative iron (III) ABC transport system, substrate‑binding protein


mut_id: MUT_9020
mutation: T→C
annotation: intergenic (‑8/‑103)
gene: PFLU_5915 ← / → elbB
description:
putative membrane protein/enhancing lycopene biosynthesis protein 2 (sigma cross‑reacting protein 27a) (scrp‑27a)


mut_id: MUT_9021
mutation: (AGCTTGTTGTGGTGAGCG)2→3
annotation: intergenic (+161/+212)
gene: elbB → / ← PFLU_5917
description:
enhancing lycopene biosynthesis protein 2 (sigma cross‑reacting protein 27a) (scrp‑27a)/conserved hypothetical protein


mut_id: MUT_9156
mutation: C→T
annotation: intergenic (‑19/‑177)
gene: PFLU_6034 ← / → PFLU_6035
description:
putative nitric oxide detoxification‑related protein/putative ubiquinone biosynthesis chorismate‑pyruvate lyase


mut_id: MUT_9163
mutation: (C)6→7
annotation: intergenic (‑51/+18)
gene: pstB ← / ← PFLU_6046
description:
phosphate ABC transport system, ATP‑binding protein/putative phosphate ABC transport system, membrane protein


mut_id: MUT_9232
mutation: T→C
annotation: intergenic (‑194/+34)
gene: srlR ← / ← glmU
description:
glucitol operon repressor/bifunctional GlmU protein [includes: UDP‑N‑acetylglucosamine pyrophosphorylase, glucosamine‑1‑phosphate N‑acetyltransferase]


